rsem/rsem-extract-reference-transcripts hg19_M_rCRS_ref 0 unc_hg19.gtf 1 unc_knownToLocus.txt hg19_M_rCRS.fa
Parsed 200000 lines
Parsed 400000 lines
Parsed 600000 lines
Parsing gtf File is done!
hg19_M_rCRS.fa is processed!
Extracting sequences is done!
Group File is generated!
Transcript Information File is generated!
Chromosome List File is generated!
Extracted Sequences File is generated!

rsem/rsem-preref hg19_M_rCRS_ref.transcripts.fa 1 hg19_M_rCRS_ref -l 125
Refs.makeRefs finished!
Refs.saveRefs finished!
IDX.fa generated!